Software
Coalescent framework of prokaryotes undergoing interspecific homologous recombination in Akita, Takuno and Innan (2018) Heredity 120: 474-484. Download the software msPRO
High similarity between distantly related species of a plant SINE family is consistent with a scenario of vertical transmission without horizontal transfers in Fawcett and Innan (2016) Mol. Biol. Evol. 33: 2593-2604. Download alignmet data 1 Download alignmet data 2
linkSNPs: Phasing Haplotypes from next-generation sequence data in Sasaki, Sugino and Innan (2013) Mol. Biol. Evol. 30: 2187-2196. Download a source code written in Perl
Simulating the coalescent process in a CNV region in Teshima and Innan (2012) Genetics 190: 1077-1086. Download a source code written in C
mbs: generating samples of DNA sequences with a biallelic site under selection in Teshima and Innan (2009) BMC Bioinformatics 10: 166. Download a source code written in C
Simulating joint sample of DNA sequences from two populations with local adaptation in Innan and Kim (2008) Genetics 179: 1713-1720. Download a source code written in C
Genomic Hudson-Kreitman-Aguade test in Innan (2006) Genetics 173: 1725-1733. Download a source code written in C
Haplotype configulation test in Innan et al. (2006) Genetics 169: 1763-1777. Download a source code written in C at Noah Rosenberg's site
Estimating nucleotide diversity from AFLP data in Innan et al (1999) Genetics 151: 1157-1164. Download a source code written in C