IRIE laboratory

โ€” Exploring the laws of life's evolution โ€”

Affiliated with RCIES SOKENDAI Asia Evo
Study organisms: bat, mouse, frog, cuttlefish, amphioxus, zebrafish, lamprey
What We Do

Big questions.
Curious minds.

We tackle open questions at the intersection of embryology, genomics, and evolutionary theory โ€” and we welcome new research ideas from students and postdocs.

Evo-Devo

Are there general rules linking embryogenesis and phylogeny? We explore the molecular basis of the vertebrate hourglass model โ€” a conserved "phylotypic" stage shared across distant species.

Evolvability

Why is bodyplan evolution so conservative? Can we quantify which animals, phenotypes, or developmental systems evolve more freely โ€” and even predict evolutionary trajectories?

Evolvedness

Which developmental systems are more evolved (more precisely, evolutionarily derived)? We develop quantitative metrics to ask how much biological change each lineage has undergone relative to a shared ancestor.

Microchimerism

We are chimera by nature โ€” maternal cells reside in our bodies for life. What roles do they play? We explore whether these cells are linked to congenital disease onset and progression.

Science Quote
Major Findings

Research highlights

View All Publications
Turtle Evolution

Turtle: Animal with Strange Anatomy

Genomic analysis confirmed turtles as relatives of birds and crocodiles. Even their odd anatomy obeys the hourglass rule.

Microchimerism

Microchimerism & Congenital Disease

Biliary atresia patients show higher maternal microchimeric cells in the liver. We propose these cells may influence certain congenital diseases.

Slowly evolving animals

Slowly Evolving Animals

Crocodilian genomes evolve slowly relative to birds. Geological and biological time differ across animal lineages.

Bird Evolution

No New Genes Needed to Evolve Birds?

>99% of avian-specific sequences are non-coding regulatory DNA. The dinosaur-to-bird transition happened by rewiring gene networks.

Gene Reusage

Gene Reusage Constrains Morphological Evolution

Pleiotropic genes both enable novelty and limit diversification โ€” a double-edged role of gene recruitment in evolution.

Echinoderms

Echinoderms: Not That Strange?

Despite their alien-looking pentameral bodies, echinoderm genomes are surprisingly similar to ours. Bodyplan evolution happened without dramatic genetic changes.

Maternal cells

What Mother Taught You Through Her Cells

First single-cell characterization of maternal microchimeric cells โ€” they repress neonatal immune over-activation and vary greatly between individuals.

Evolution and learning

Analogy Between Evolution and Learning

Evolutionary and learning processes share deep structural similarities โ€” both explore fitness landscapes through iterative trial-and-error, with exciting implications for AI.

Turtle
Lamprey
Axolotl
Embryo