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last updated on 2023 Dec 11




Eurekalert



Publications (original articles)

  1. Fawcett, Takeshima et al. (2023) Genome sequencing reveals the genetic architecture of heterostyly and domestication history of common buckwheat. Nature Plants 9:1236–1251.
    DOI: 10.1038/s41477-023-01474-1

  2. Dornburg et al. (2021) From IgZ to IgT: A Call for a Common Nomenclature for Immunoglobulin Heavy Chain Genes of Ray-Finned Fish. Zebrafish 18:343–345.
    DOI:10.1089/zeb.2021.0071

  3. Thompson et al. (2021) The bowfin genome illuminates the developmental evolution of ray-finned fishes. Nature genetics 9:1373-1384.
    DOI: 10.1038/s41588-021-00914-y

  4. Dornburg et al. (2021) Holosteans contextualize the role of the teleost genome duplication in promoting the rise of evolutionary novelties in the ray‑finned fish innate immune system. Immunogenetics 73:479–497.
    DOI: 10.1007/s00251-021-01225-6

  5. Li et al. (2020) Genomic insights of body plan transitions from bilateral to pentameral symmetry in Echinoderms. Communications biology 3:371.
    DOI: 10.1038/s42003-020-1091-1

  6. Wcisel et al. (2017) Spotted gar and the evolution of innate immune receptors. Journal of Experimental Zoology Part B: Molecular and Developmental Evolution 328:666-684.
    DOI: 10.1002/jez.b.22738

  7. Braasch et al. (2016) The spotted gar genome illuminates vertebrate evolution and facilitates human-teleost comparisons. Nature genetics 48:427–437.
    DOI: 10.1038/ng.3526

  8. Taguchi-Shiobara et al. (2015) Natural Variation in the Flag Leaf Morphology of Rice Due to a Mutation of the NARROW LEAF 1 Gene in Oryza sativa L.. Genetics 201:795-808.
    DOI: 10.1534/genetics.115.181040

  9. Saha et al. (2014) Genome complexity in the coelacanth is reflected in its adaptive immune system. Journal of Experimental Zoology Part B: Molecular and Developmental Evolution 322:438-463.
    DOI: 10.1002/jez.b.22558

  10. Boudinot et al. (2014) A tetrapod‐like repertoire of innate immune receptors and effectors for coelacanths. Journal of Experimental Zoology Part B: Molecular and Developmental Evolution 322:415-437.
    DOI: 10.1002/jez.b.22559

  11. Amemiya, Alföldi et al. (2013) The African coelacanth genome provides insights into tetrapod evolution. Nature 496:311–316.
    DOI: 10.1038/nature12027

  12. Sutoh et al. (2012) Comparative genomic analysis of the proteasome β5t subunit gene: implications for the origin and evolution of thymoproteasomes. Immunogenetics 64:49-58.
    DOI: 10.1007/s00251-011-0558-0

  13. Yasui et al. (2012) S-LOCUS EARLY FLOWERING 3 Is Exclusively Present in the Genomes of Short-Styled Buckwheat Plants that Exhibit Heteromorphic Self-Incompatibility. PloS one 7:e31264.
    DOI: 10.1371/journal.pone.0031264

  14. Dishaw et al. (2010) The basis for haplotype complexity in VCBPs, an immune-type receptor in amphioxus. Immunogenetics 62:623-631.
    DOI: 10.1007/s00251-010-0464-x

  15. Dishaw et al. (2008) Genomic complexity of the variable region-containing chitin-binding proteins in amphioxus. BMC genetics 9:78.
    DOI: 10.1186/1471-2156-9-78

  16. Trede et al. (2008) Zebrafish mutants with disrupted early T‐cell and thymus development identified in early pressure screen. Developmental Dynamics 237:2575-2584.
    DOI: 10.1002/dvdy.21683

  17. Yasui et al. (2008) Construction of a BAC library for buckwheat [Fagopyrum esculentum] genome research: An application to positional cloning of agriculturally valuable traits. Genes and genetic systems 83:393-401.
    DOI: 10.1266/ggs.83.393

  18. Cannon et al. (2006) Ancient divergence of a complex family of immune-type receptor genes. Immunogenetics 58:362-373.
    DOI: 10.1007/s00251-006-0112-7

  19. Yoder et al. (2004) Resolution of the novel immune-type receptor gene cluster in zebrafish. Proceedings of the National Academy of Sciences of the United States of America 101:15706-15711.
    DOI: 10.1073/pnas.0405242101

  20. Danilova et al. (2004) T cells and the thymus in developing zebrafish. Developmental and Comparative Immunology 28:755-767.
    DOI: 10.1016/j.dci.2003.12.003

  21. Suzuki et al. (2004) Construction of a bacterial artificial chromosome library from the inshore hagfish, Eptatretus burgeri: a resource for the analysis of the agnathan genome. Genes and genetic systems 79:251-253.
    DOI: 10.1266/ggs.79.251

  22. Ota et al. (2003) Lineage-restricted retention of a primitive immunoglobulin heavy chain isotype within the Dipnoi reveals an evolutionary paradox. Proceedings of the National Academy of Sciences 100:2501-2506.
    DOI: 10.1073/pnas.0538029100

  23. Ota et al. (2003) Positive Darwinian selection operating on the immunoglobulin heavy chain of Antarctic fishes. Journal of Experimental Zoology Part B: Molecular and Developmental Evolution 295:45-58.
    DOI: 10.1002/jez.b.4

  24. Yoder et al. (2002) Cloning novel immune-type inhibitory receptors from the rainbow trout, Oncorhynchus mykiss. Immunogenetics 54:662-670.
    DOI: 10.1007/s00251-002-0511-3

  25. Amemiya et al. (2000) Generation of a P1 artificial chromosome library of the Southern pufferfish. Gene 272:283-289.
    DOI: 10.1016/S0378-1119(01)00525-X

  26. Schwartz and Ota (1997) The 239AB gene on chromosome 22: a novel member of an ancient gene family. Gene 194:57-62.
    DOI: 10.1016/S0378-1119(97)00149-2

  27. Haire et al. (1996) A third Ig light chain gene isotype in Xenopus laevis consists of six distinct VL families and is related to mammalian lambda genes. The Journal of Immunology 157:1544-1550.
    DOI: 10.4049/jimmunol.157.4.1544

  28. Mogues et al. (1996) Characterization of two mannose-binding protein cDNAs from rhesus monkey (Macaca mulatta): structure and evolutionary implications. Glycobiology 6:543-550.
    DOI: 10.1093/glycob/6.5.543

  29. Ota and Amemiya (1996) A nonradioactive method for improved restriction analysis and fingerprinting of large P1 artificial chromosome clones. Genetic analysis: biomolecular engineering 12:173-178.
    DOI: 10.1016/S1050-3862(96)80003-9

  30. Lee et al. (1995) Positive selection is a general phenomenon in the evolution of abalone sperm lysin. Molecular Biology and Evolution 12:231-238.
    DOI: 10.1093/oxfordjournals.molbev.a040200

  31. Ota and Nei (1995) Evolution of immunoglobulin VH pseudogenes in chickens. Molecular biology and evolution 12:94-102.
    DOI: 10.1093/oxfordjournals.molbev.a040194

  32. Ota and Nei (1994) Variance and covariances of the numbers of synonymous and nonsynonymous substitutions per site. Molecular biology and evolution 11:613-619.
    DOI: 10.1093/oxfordjournals.molbev.a040140

  33. Ota and Nei (1994) Estimation of the number of amino acid substitutions per site when the substitution rate varies among sites. Journal of Molecular Evolution 38:642-643.
    DOI: 10.1007/BF00175885

  34. Rast et al. (1994) Immunoglobulin light chain class multiplicity and alternative organizational forms in early vertebrate phylogeny. Immunogenetics 40:83-99.
    DOI: 10.1007/BF00188170

  35. Ota and Nei (1994) Divergent evolution and evolution by the birth-and-death process in the immunoglobulin VH gene family. Molecular Biology and Evolution 11:469-482.
    DOI: 10.1093/oxfordjournals.molbev.a040127

  36. Sabatini et al. (1993) Nucleotide sequence analysis of the human salivary protein genes HIS1 and HIS2, and evolution of the STATH/HIS gene family. Molecular biology and evolution 10:497-511.
    DOI: 10.1093/oxfordjournals.molbev.a040022

  37. Hughes et al. (1990) Positive Darwinian selection promotes charge profile diversity in the antigen-binding cleft of class I major-histocompatibility-complex molecules. Molecular Biology and Evolution 7:515-524.
    DOI: 10.1093/oxfordjournals.molbev.a040626

  38. Frazier et al. (1990) Carbonic Anhydrase II Gene Expression in Cell Lines from Human Pancreatic Adenocarcinoma. Pancreas 5:507-514.
    abstract

  39. Ohnishi and Ohta (1987) Construction of a linkage map in common buckwheat, Fagopyrum esculentum Moench. Japanese Journal of Genetics 62:397-414.
    DOI: 10.1266/jjg.62.397

Publications (Book chapter)

  1. Ueno et al. (2016) Genetic analyses of the heteromorphic self-incompatibility (S) locus in buckwheat.
    Molecular breeding and nutritional aspects of buckwheat. Pp.411-421.

  2. Ota et al. (2000) Evolution of vertebrate immunoglobulin variable gene segments.
    Origin and Evolution of the Vertebrate Immune System. Pp.221-245.

  3. Amemiya et al. (1996) Construction of P1 artificial chromosome (PAC) libraries from lower vertebrates.
    Analysis of Nonmammalian genomes. Pp.223-256.

  4. Nei et al. (1993) Genetic variation and evolution of human populations.
    Genetics of cellular, individual, family, and population variability. Pp.239-252.

  5. Nei and Ota (1991) Evolutionary relationships of human populations at the molecular level.
    Evolution of Life: Fossils, Molecules, and Culture Pp..415-428

Book

  1. 根井正利, S.クマー (根井正利監訳・改訂, 大田竜也, 竹崎直子共訳) (2006) 分子進化と分子系統学 培風館

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